Efficiently Solving the Stochastic Reaction-Diffusion Master Equation in C++ with the COMSOL Multiphysics® Software
L. A. Widmer , J. Stelling ,
 Department of Biosystems Science and Engineering, ETH Zürich and Swiss Institute of Bioinformatics, Basel, Switzerland
We demonstrate a simulation engine using COMSOL® and MATLAB® software that is able to simulate stochastic reaction-diffusion models in the reaction-diffusion master equation framework. We use this engine to construct models of budding yeast cells with embedded microtubules, interfacing stochastic microtubule dynamics with spatiotemporal signaling networks acting during mitosis. Our simulation ...
CNR-ITAE, Institute of Advanced Technologies for Energy, Messina, Italy
A biogas steam reforming reactor has been developed in order to be integrated into a proof-of-concept SOFC system, able to operate with biogas produced in an industrial waste water treatment unit. A mathematical model, aimed at describing the performance of the reactor, has been developed. The reactor is simplified and modeled as a non-isothermal plug flow reactor. The reactor is fed with a ...
B. Niu, W. Yan, A.A. Shapiro, and E.H. Stenby
Department of Chemical and Biochemical Engineering, Technical University of Denmark, Kgs. Lyngby, Denmark
As an effective method to cope with green-house gas emission, and to enhance oil recovery, injection of carbon dioxide into oil reservoirs has obtained increasing attentions. The flooding process involves complex phase behavior among oil, brine and CO2, and geochemical reaction between CO2 and rock. COMSOL Multiphysics® was first applied to simulating two flooding processes with known ...
J. Völler, M. Follmann, C. Bayer, and T. Melin
AVT Chemical Process Engineering, RWTH Aachen University, Aachen, Germany
Low temperature fuel cells require hydrogen of high purity for electricity production to avoid catalyst poisoning. To purify hydrogenrich flue gases from hydrocarbon steam reforming membrane shift reactors with a metal membranes may be utilized. A model of a tubular membrane shift reactor with a hydrogenseparating palladium membrane is modeled in the COMSOL Multiphysics® Chemical Engineering ...
D. Papasidero, F. Manenti
Politecnico di Milano, Dipartimento di Chimica, Materiali e Ingegneria Chimica “Giulio Natta”, Milano, Italy
One big challenge for the food industry is to predict and optimize flavors. The Maillard reaction occurs in food matrices containing carbohydrates and proteins under specific operating conditions. The presented research couples thermal and kinetic modeling to the bread baking process, an ideal field to study this complex set of reactions responsible for many bread flavors. The thermal model ...
A Modified Koutecký-Levich Equation for the Analysis of Electrochemical Flow Cells with Complex Geometries
S. A. Tschupp , S. E. Temmel , N. Poyatos Salguero , J. Herranz , T.J. Schmidt ,
 Paul Scherrer Institut, Villigen, Switzerland
 ETH Zürich, Zürich, Switzerland
Electrochemical flow cells have found widespread use in analytical chemistry due to their short response time, high sensitivity and selectivity. The geometrical flexibility and therefore, the ease of coupling the electrochemical to other experimental techniques has attracted considerable interest for applications in electrocatalytic research as well. Such coupling is far more cumbersome with the ...
S. Mohammadighavam, B. Kløve
University of Oulu, Department of Process and Environmental Engineering ,Oulu, Finland
After rapid mixing of waste water and coagulant, an effective slow mixing during a reasonable retention time will cause to grow the size of flocs up which will settle out easily. Around-the-end hydraulic mixer with barriers is one of the efficient facilities that have been used in water treatment plants for this purpose. A uniform velocity gradient (G) is needed to achieve efficient mixing and ...
Three-Dimensional Percolation Properties Simulation of a Marine Coating Based on Its Real Structure Obtained from Ptychographic X-Ray Tomography - new
B. Chen, M. Guizar-Sicairos, G. Xiong, L. Shemilt, A. Diaz, J. Nutter, N. Burdet, S. Huo, F. Vergeer, A. Burgess, I. Robinson
London Centre for Nanotechnology, University College London, London, UK
Paul Scherrer Institute, Villigen, Switzerland
AkzoNobel Co. Ltd., Sassenheim, Netherlands
AkzoNobel (UK) Co. Ltd., Tyne and Wear, UK
We present quantitative nano-scale analysis of the 3D spatial structure of an anticorrosive aluminium epoxy barrier marine coating obtained by ptychographic X-ray computed tomography (PXCT) [1-3]. We then use COMSOL Multiphysics® software to perform simulations on the acquired real 3D structure to demonstrate how percolation through this actual 3D structure impedes ion diffusion in the ...
V. Panneerselvam , R. C. Thiagarajan 
 ATOA Scientific Technologies Pvt Ltd, Bengaluru, India
Battery grids are critical system used in automobile, renewable energy, medical devices and mobile phones. Research efforts are directed to increase energy density, longevity and reduce the cost. This paper is related to computational optimisation of lead acid battery for efficiency and performance improvement. Battery grid is the precursor for the active material and current distribution in ...
Simulation and Design of a Microfluidic Respirometer for Semi-Continuous Amperometric Short Time Biochemical Oxygen Demand (BODST) Analysis
F.J. del Campo, A. Torrents, J. Mas, F.X. Muñoz
Instituto de Microelectronica de Barcelona, IMB-CNM (CSIC), Campus Universitat Autònoma de Barcelona, Bellaterra, Barcelona, Spain
Departement de Genètica i Microbiologia, Campus Universitat Autònoma de Barcelona, Bellaterra, Barcelona, Spain
Introduction: This work presents the design of a novel flow cell based miniaturized electrochemical respirometer to monitor organic content in water samples semi-continuously, in contrast to current Biochemical Oxygen Demand, BOD, methods. Simulation techniques has been used to parameterize and optimize aspects such as height and length of the channels, materials and thickness, flow and oxygen ...